Plasmid fitness costs are caused by specific genetic conflicts enabling resolution by compensatory mutation

Hall, James ORCID: https://orcid.org/0000-0002-4896-4592 (2021) Plasmid fitness costs are caused by specific genetic conflicts enabling resolution by compensatory mutation. [Data Collection]

Data Catalogue DOI: 10.17638/datacat.liverpool.ac.uk/1275
Original publication URL: https://doi.org/10.1371/journal.pbio.3001225

Description

Experimental data associated with "Plasmid fitness costs are caused by specific genetic conflicts enabling resolution by compensatory mutation". See README file for more details. Full analysis scripts can be found at github.com/jpjh/COMPMUT. Raw RNAseq reads can be found at NCBI-GEO, accession number GSE151570.

Keywords: Plasmid, Bacteria, Pseudomonas, Horizontal Gene Transfer, Evolution, Genetics, RNAseq, Transcriptomics
Divisions: Faculty of Health and Life Sciences > Institute of Infection, Veterinary and Ecological Sciences > Evolution, Ecology and Behaviour
Depositing User: James Hall
Date Deposited: 15 Sep 2021 10:41
Last Modified: 19 Nov 2021 12:02
DOI: 10.17638/datacat.liverpool.ac.uk/1275
URI: https://datacat.liverpool.ac.uk/id/eprint/1275

Available Files

Data

COMPMUT_exp_data_1.csv
+ COMPMUT_exp_data_1.csv
Creative Commons: Attribution 3.0
COMPMUT_exp_data_2.csv
+ COMPMUT_exp_data_2.csv
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COMPMUT_exp_data_3.csv
+ COMPMUT_exp_data_3.csv
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COMPMUT_exp_data_3-1.csv
+ COMPMUT_exp_data_3-1.csv
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COMPMUT_exp_data_4.csv
+ COMPMUT_exp_data_4.csv
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COMPMUT_exp_data_5.csv
+ COMPMUT_exp_data_5.csv
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COMPMUT_exp_data_5-1.csv
+ COMPMUT_exp_data_5-1.csv
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COMPMUT_exp_data_6.csv
+ COMPMUT_exp_data_6.csv
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COMPMUT_exp_data_7.csv
+ COMPMUT_exp_data_7.csv
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COMPMUT_exp_data_8.csv
+ COMPMUT_exp_data_8.csv
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COMPMUT_exp_data_9.csv
+ COMPMUT_exp_data_9.csv
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COMPMUT_RNAseq_ ... le_chr_vanc.csv
+ COMPMUT_RNAseq_ ... le_chr_vanc.csv
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COMPMUT_RNAseq_ ... le_chr_comp.csv
+ COMPMUT_RNAseq_ ... le_chr_comp.csv
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COMPMUT_RNAseq_ ... _table_pQ57.csv
+ COMPMUT_RNAseq_ ... _table_pQ57.csv
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COMPMUT_RNAseq_ ... table_pQ103.csv
+ COMPMUT_RNAseq_ ... table_pQ103.csv
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COMPMUT_RNAseq_5_tpm.csv
+ COMPMUT_RNAseq_5_tpm.csv
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COMPMUT_RsmA_prediction.txt
+ COMPMUT_RsmA_prediction.txt
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COMPMUT_mutations.csv
+ COMPMUT_mutations.csv
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COMPMUT_analysis_Sep21.zip
+ COMPMUT_analysis_Sep21.zip
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COMPMUT_readme.html
+ COMPMUT_readme.html
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COMPMUT_readme.md
+ COMPMUT_readme.md
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